Tools for manipulating biological data, particularly multiple sequence alignments
The bx-python project is a Python library and associated set of scripts for rapid implementation of genome scale analyses. The library contains a variety of useful modules, but the particular strengths are:
Build currently requires liblzo, e.g. sudo apt-get install liblzo2-dev on debian/ubuntu).
The package can be installed with pip:
pip install bx-python
It is available in bioconda (recommended):
conda install -c conda-forge -c bioconda bx-python
It is available in Debian and Ubuntu:
sudo apt install python3-bx
Or can be built from a checkout of the repository:
python setup.py install