Move macOS dynamic libraries into package
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######## Delocate ########
macOS utilities to:
install_names
and rpath
to cause code to load from copies
of librariesProvides scripts:
delocate-listdeps
-- show libraries a tree depends ondelocate-path
-- copy libraries a tree depends on into the tree and relinkdelocate-wheel
-- rewrite wheel having copied and relinked library
dependencies into the wheel tree.delocate-fuse
-- combine two wheels with different architectures into one
wheel with dual architecture binaries.Auditwheel <https://github.com/pypa/auditwheel>
_ is a similar tool for Linux.
Auditwheel started life as a partial fork of Delocate.
The problem
Let's say you have built a wheel somewhere, but it's linking to dynamic libraries elsewhere on the machine, so you can't distribute it, because others may not have these same libraries. Here we analyze the dependencies for a Scipy wheel::
$ delocate-listdeps scipy-0.14.0b1-cp34-cp34m-macosx_10_6_intel.whl
/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/libgcc_s.1.dylib
/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/libgfortran.3.dylib
/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/libquadmath.0.dylib
By default, this does not include libraries in /usr/lib
and /System
.
See those too with::
$ delocate-listdeps --all scipy-0.14.0-cp34-cp34m-macosx_10_6_intel.whl
/System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
/usr/lib/libSystem.B.dylib
/usr/lib/libstdc++.6.dylib
/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/libgcc_s.1.dylib
/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/libgfortran.3.dylib
/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/libquadmath.0.dylib
The output tells me that Scipy has picked up dynamic libraries from my
Homebrew installation of gfortran
(as well as the system libs).
You can get a listing of the files depending on each of the libraries,
using the --depending
flag::
$ delocate-listdeps --depending scipy-0.14.0-cp34-cp34m-macosx_10_6_intel.whl
/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/libgcc_s.1.dylib:
scipy/interpolate/dfitpack.so
scipy/special/specfun.so
scipy/interpolate/_fitpack.so
...
A solution
We can fix like this::
$ delocate-wheel -w fixed_wheels -v scipy-0.14.0-cp34-cp34m-macosx_10_6_intel.whl
Fixing: scipy-0.14.0-cp34-cp34m-macosx_10_6_intel.whl
Copied to package .dylibs directory:
/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/libgcc_s.1.dylib
/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/libgfortran.3.dylib
/usr/local/Cellar/gfortran/4.8.2/gfortran/lib/libquadmath.0.dylib
The -w
flag tells delocate-wheel
to output to a new wheel directory
instead of overwriting the old wheel. -v
(verbose) tells you what
delocate-wheel
is doing. In this case it has made a new directory in the
wheel zipfile, named scipy/.dylibs
. It has copied all the library
dependencies that are outside the macOS system trees into this directory, and
patched the python .so
extensions in the wheel to use these copies instead
of looking in /usr/local/Cellar/gfortran/4.8.2/gfortran/lib
.
Check the links again to confirm::
$ delocate-listdeps --all fixed_wheels/scipy-0.14.0-cp34-cp34m-macosx_10_6_intel.whl
/System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
/usr/lib/libSystem.B.dylib
/usr/lib/libstdc++.6.0.9.dylib
@loader_path/../../../../.dylibs/libgcc_s.1.dylib
@loader_path/../../../../.dylibs/libgfortran.3.dylib
@loader_path/../../../../.dylibs/libquadmath.0.dylib
@loader_path/../../../.dylibs/libgcc_s.1.dylib
@loader_path/../../../.dylibs/libgfortran.3.dylib
@loader_path/../../../.dylibs/libquadmath.0.dylib
@loader_path/../../.dylibs/libgcc_s.1.dylib
@loader_path/../../.dylibs/libgfortran.3.dylib
@loader_path/../../.dylibs/libquadmath.0.dylib
@loader_path/../.dylibs/libgcc_s.1.dylib
@loader_path/../.dylibs/libgfortran.3.dylib
@loader_path/../.dylibs/libquadmath.0.dylib
@loader_path/libgcc_s.1.dylib
@loader_path/libquadmath.0.dylib
So - system dylibs the same, but the others moved into the wheel tree.
This makes the wheel more likely to work on another machine which does not have the same version of Gfortran installed - in this example.
Current Python.org Python and the macOS system Python (/usr/bin/python
)
are both dual architecture binaries. For example::
$ lipo -info /usr/bin/python
Architectures in the fat file: /usr/bin/python are: x86_64 arm64e
Note: you can compile ARM binaries for basic ARM (arm64
), or to use
some extended ARM capabilities (arm64e
) - see this SO post <https://stackoverflow.com/questions/52624308/xcode-arm64-vs-arm64e>
_. Both
types of binaries work on Mac M1 and M2 machines, so we will use arm64
to
refer to either arm64
or arm64e
.
The Big Sur macOS Python above has both x86_64
and arm64
(M1) versions
fused into one file. Earlier versions of macOS had dual architectures that
were 32-bit (i386
) and 64-bit (x86_64
).
For full compatibility with system and Python.org Python, wheels built for
Python.org Python or system Python should have the corresponding architectures
— e.g. x86_64
and arm64
versions of the Python extensions and their
libraries. It is easy to link Python extensions against single architecture
libraries by mistake, and therefore get single architecture extensions and /
or libraries. In fact my Scipy wheel is one such example, because I
inadvertently linked against the Homebrew libraries, which were x86_64
only. To check this you can use the --require-archs
flag::
$ delocate-wheel --require-archs=intel scipy-0.14.0-cp34-cp34m-macosx_10_6_intel.whl
Traceback (most recent call last):
File "/Users/mb312/.virtualenvs/delocate/bin/delocate-wheel", line 77, in <module>
main()
File "/Users/mb312/.virtualenvs/delocate/bin/delocate-wheel", line 69, in main
check_verbose=opts.verbose)
File "/Users/mb312/.virtualenvs/delocate/lib/python2.7/site-packages/delocate/delocating.py", line 477, in delocate_wheel
"Some missing architectures in wheel")
delocate.delocating.DelocationError: Some missing architectures in wheel
Notice that this command was using an earlier version of Delocate that supported Python 2; we now support Python 3 only.
The intel
argument to --require-arch
above requires dual 32- and 64-
bit architecture extensions and libraries. You can see which extensions are at
fault by adding the -v
(verbose) flag::
$ delocate-wheel -w fixed_wheels --require-archs=intel -v scipy-0.14.0-cp34-cp34m-macosx_10_6_intel.whl
Fixing: scipy-0.14.0-cp34-cp34m-macosx_10_6_intel.whl
Required arch i386 missing from /usr/local/Cellar/gfortran/4.8.2/gfortran/lib/libgfortran.3.dylib
Required arch i386 missing from /usr/local/Cellar/gfortran/4.8.2/gfortran/lib/libquadmath.0.dylib
Required arch i386 missing from scipy/fftpack/_fftpack.so
Required arch i386 missing from scipy/fftpack/convolve.so
Required arch i386 missing from scipy/integrate/_dop.so
...
I need to rebuild this wheel to link with dual-architecture libraries.
Modern Mac wheels can be either arm64
(M1/M2 ARM), x86_64
(64-bit
Intel) or both (universal2
).
Building an entire Python wheel as dual-architecture can be difficult, perhaps
because you need to link different libraries in the two cases, or you need
different compiler flags, or because you build for arm64
on one continuous
integration platform (such as - at time of writing - Cirrus CI), and x86_64
on another.
One solution to this problem is to do an entire arm64
wheel build, and then
an entire x86_64
wheel build, and fuse the two wheels into a universal
wheel.
That is what the delocate-fuse
command does.
Let's say you have built an ARM and Intel wheel, called, respectively:
scipy-1.9.3-cp311-cp311-macosx_12_0_arm64.whl
scipy-1.9.3-cp311-cp311-macosx_10_9_x86_64.whl
Then you could create a new fused (universal2
) wheel in the tmp
subdirectory with::
delocate-fuse scipy-1.9.3-cp311-cp311-macosx_12_0_arm64.whl scipy-1.9.3-cp311-cp311-macosx_10_9_x86_64.whl -w tmp
The output wheel in that case would be:
tmp/scipy-1.9.3-cp311-cp311-macosx_12_0_arm64.whl
Note that we specified an output directory above with the -w
flag. If we
had not done that, then we overwrite the first wheel with the fused wheel. And
note that the wheel written into the tmp
subdirectory has the same name as
the first-specified wheel.
In the new wheel, you will find, using lipo -archs
- that all binaries with
the same name in each wheel are now universal (x86_64
and arm64
).
To be useful, you should rename the output wheel to reflect the fact that it is now a universal wheel - in this case to:
tmp/scipy-1.9.3-cp311-cp311-macosx_12_0_universal2.whl
When running delocate-wheel
or its sister command delocate-path
, you
may get errors like this::
delocate.delocating.DelocationError: library "<long temporary path>/wheel/libme.dylib" does not exist
This happens when one of your libraries gives a library dependency with a
relative path. For example, let's say that some file in my wheel has this for
the output of otool -L myext.so
::
myext.so:
libme.dylib (compatibility version 10.0.0, current version 10.0.0)
/usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version 60.0.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1197.1.1)
The first line means that myext.so
expects to find libme.dylib
at
exactly the path ./libme.dylib
- the current working directory from which
you ran the executable. The output should be something like::
myext.so:
/path/to/libme.dylib (compatibility version 10.0.0, current version 10.0.0)
/usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version 60.0.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1197.1.1)
To set the path to the library, the linker is using the install name id
_ of
the linked library. In this bad case, then otool -L libme.dylib
will give
something like::
libme.dylib (compatibility version 10.0.0, current version 10.0.0)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1197.1.1)
where the first line is the install name id
_ that the linker picked up when
linking myext.so
to libme.dylib
. Your job is to fix the build process
so that libme.dylib
has install name id /path/to/libme.dylib
.
This is not a problem specific to Delocate; you will need to do this to
make sure that myext.so
can load libme.dylib
without libme.dylib
being in the current working directory. For CMAKE
builds you may want to
check out CMAKE_INSTALL_NAME_DIR_.
Code
See https://github.com/matthew-brett/delocate
Released under the BSD two-clause license - see the file LICENSE
in the
source distribution.
travis-ci <https://travis-ci.org/matthew-brett/delocate>
_ kindly tests the
code automatically under Python 3.6 through 3.9.
The latest released version is at https://pypi.python.org/pypi/delocate
Support
Please put up issues on the Delocate issue tracker <https://github.com/matthew-brett/delocate/issues>
_.
.. _install name id: http://matthew-brett.github.io/docosx/mac_runtime_link.html#the-install-name .. _CMAKE_INSTALL_NAME_DIR: http://www.cmake.org/cmake/help/v3.0/variable/CMAKE_INSTALL_NAME_DIR.html